PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 904431
Common NameARALYDRAFT_904431
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 600aa    MW: 64246.4 Da    PI: 9.3329
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
904431genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-0581103123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              + C+ C+k F r  nL+ H r H
   904431  81 FICEVCNKGFQREQNLQLHRRGH 103
              89*******************88 PP

2zf-C2H212.50.00046157179123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              +kC +C+k++  +s+ k H +t+
   904431 157 WKCDKCSKRYAVQSDWKAHSKTC 179
              58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.7E-680103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.72E-780103No hitNo description
PfamPF121712.9E-581103IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.005281103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9981103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355110122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-5145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.72E-7152177No hitNo description
SMARTSM00355140157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MAASSSSAAS FFGVRQDDQS HLLPSNSSAA APPPPPPHHQ TPLPPLEAPP QKKKRNQPRT  60
PNSDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKSTKEVKRK  120
VYLCPEPSCV HHDPSRALGD LTGIKKHYYR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG  180
TKEYRCDCGT LFSRRDSFIT HRAFCDALAQ ESARHPTSLT SLPSHHFPYG QNTNNSNNNT  240
SSMILGLSHM GAPQNHDHQS GDVLRLGSGG GGAASRSSSD LIAGNASGYF MQDQNPSFHD  300
QQDHHHHHQQ GFLAANNNIK PSPMGFQQNL MQFSHDNHNS ASSNLFNLSF LSGNNGVTSA  360
TSNPNAANAA AVSSSNLMIS NHFDGDNAVG GGGGGEGSTG LFPNNLMSSA DRITSGSVPS  420
LFSSSMQNPN SAPHMSATAL LQKAAQMGST SSNNNNGSNN NNNNNASSIL RSFGSGIYGE  480
NESNLQDLMN SFSNPGATGN VNGVDSPFGS YGGVNKGLSA DKQSMTRDFL GVGQIVRSMS  540
GSGGFQQQQQ QQQQQQQHGN SRERVGSSSD SADRSSMNVY TGGGPASTSP PYGIHHASF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6214950.0AJ621495.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 2 (idz2 gene).
GenBankAY0561740.0AY056174.1 Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds.
GenBankBT0012150.0BT001215.1 Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875111.10.0hypothetical protein ARALYDRAFT_904431
SwissprotQ9ZUL30.0IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLD7LPZ30.0D7LPZ3_ARALL; Putative uncharacterized protein
STRINGscaffold_500135.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43732654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.10.0indeterminate(ID)-domain 5